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===General Setup=== <code> \documentclass[a4paper,12pt]{article} \usepackage{amsmath,mathrsfs,stmaryrd,graphicx} \usepackage[top=2cm,bottom=2cm,left=2cm,right=1cm]{geometry} \title{...} \author{Name\footnote{affiliation} and name\footnote{}} } \date{} \begin{document} \maketitle \begin{thebibliography}{99} \bibitem{} Rozowsky, J.. (2009). {\it PeakSeq enables systematic scoring of ChIP-Seq experiments relative to controls}. Nature Biotechnology, \textbf{27}(1), 66–75. \end{thebibliography} \end{document} </code> ===Use natbib=== <code> \usepackage{natbib} ... %use bib \bibliographystyle{apalike} \bibliography{bib file name without .bib} </code> When compile, <code> latex file.tex bibtex file latex file.tex latex file.tex dvipdf file.dvi </code> ===Convert tiff to eps=== tiff2ps -e input.tif > output.eps Must output encapsulated eps; otherwise the figure can not be located correctly in the latex. ===Sweave=== in .rnw file <code> \usepackage[utf8]{inputenc}%used with sweave \SweaveOpts{engine=R,eps=FALSE,pdf=TRUE,width=3,height=6.5,strip.white=all}%used with sweave \SweaveOpts{engine=R,eps=FALSE,pdf=TRUE,width=3,height=6.5,strip.white=all} .. <<eval=T,echo=T,fig=T,results=verbatim,cache=T>>= ... @ </code> Compile: <code> library(cacheSweave) Sweave("foo.Rnw", driver = cacheSweaveDriver) </code> ===Set Page Format=== <code> \usepackage{fancyhdr} \pagestyle{fancy} \fancyhead{} % clear all header fields \fancyhead[C]{Chandler Zuo} \fancyhead[L]{} \fancyhead[R]{UW Madison} \fancyfoot{} % clear all footer fields \fancyfoot[C]{\textbf{Page \thepage}} </code> ==Animate== <code> \usepackage{animate} \animategraphics[width=0.9\textwidth]{5}{pdf_file_name_without_.pdf}{}{} </code>
